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FHtest
Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class.
Located in K&T transfer / Software / R / Bioconductor Packages
goProfiles
The package implements methods to compare lists of genes based on comparing the corresponding 'functional profiles'.
Located in K&T transfer / Software / R / Bioconductor Packages
Easy HeatMaps
A web tool to produce simple heatmaps for microarray data.
Located in K&T transfer / Software / Web tools
msmsTests
Statistical tests for label-free LC-MS/MS data by spectral counts, to discover differentially expressed proteins between two biological conditions. Three tests are available: Poisson GLM regression, quasi-likelihood GLM regression, and the negative binomial of the edgeR package.The three models admit blocking factors to control for nuissance variables.To assure a good level of reproducibility a post-test filter is available, where we may set the minimum effect size considered biologicaly relevant, and the minimum expression of the most abundant condition.
Located in K&T transfer / Software / R / Bioconductor Packages
msmsEDA
Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.
Located in K&T transfer / Software / R / Bioconductor Packages
Others
Located in K&T transfer / Software
EVA
Exome Variant Analysis (EVA) Pipeline for NGS Data. Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in progress that is being used already for production in some research centers.
Located in K&T transfer / Software / Others
Multivariate Analysis
Conxita Arenas
Located in K&T transfer / Services
Bioinformatics and “omics” data analysis
Alex Sánchez
Located in K&T transfer / Services
Retreat GRBIO (Castelldefels, Dimarts 21-22 juliol 2015).
Located in Activities / Other events